Index

A

ABC (class in flim.plugin) AbsAutoencoder (class in flim.analysis.ml.autoencoder) abstractmethod() (in module flim.plugin) AbstractPlugin (class in flim.plugin), [1] activate() (flim.gui.datapanel.PandasFrame method) add_files() (flim.core.importer.dataimporter method) add_filters() (flim.core.analyzer.dataanalyzer method) add_rangefilters() (flim.core.analyzer.dataanalyzer method) AERunningConfigDlg (class in flim.analysis.aerun) AETraining (class in flim.analysis.aetraining) AETrainingConfigDlg (class in flim.analysis.aetraining) agg_functions (flim.analysis.summarystats.SummaryStats attribute)

AnalysisListCtrl (class in flim.gui.listcontrol) AnalysisNode (class in flim.core.analysisgraph) apply() (flim.core.analysisgraph.AnalysisNode method) (flim.core.analysisgraph.CreateColumn method) (flim.core.analysisgraph.Merge method) (flim.core.filter.Filter method) apply_filter() (flim.core.analyzer.dataanalyzer method) (flim.core.filter.RangeFilter method) apply_filters() (flim.gui.datapanel.PandasFrame method) Autoencoder_One_Six (class in flim.analysis.ml.autoencoder) Autoencoder_One_Three (class in flim.analysis.ml.autoencoder) Autoencoder_Two_Five (class in flim.analysis.ml.autoencoder) Autoencoder_Two_Ten (class in flim.analysis.ml.autoencoder)

B

BarPlot (class in flim.analysis.barplots) BarPlotConfigDlg (class in flim.analysis.barplots) BasicAnalysisConfigDlg (class in flim.gui.dialogs) BasicNode (class in flim.core.analysisgraph)

BeginLabelEdit() (flim.gui.listcontrol.AnalysisListCtrl method) bind() (flim.plugin.Task method) bindata() (in module flim.core.plots) BoxPlot (class in flim.analysis.boxplots)

C

calculate() (flim.core.preprocessor.defaultpreprocessor method) CanGetValueAs() (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) categorize_data() (flim.core.analyzer.dataanalyzer method) celltype_compartment_fov_treatment_cell_parser (class in flim.core.parser) check_data_msg() (in module flim.gui.dialogs) check_items() (flim.gui.listcontrol.AnalysisListCtrl method) (flim.gui.listcontrol.FilterListCtrl method) clip_range() (flim.core.filter.RangeFilter method) close_and_destroy() (flim.gui.datapanel.PandasFrame method) columns_available() (flim.core.analyzer.dataanalyzer method) (flim.core.preprocessor.defaultpreprocessor method) compartment_fov_treatment_cell_parser (class in flim.core.parser) compartment_treatment_fov_cell_parser (class in flim.core.parser)

compile_patterns() (flim.core.parser.defaultparser method) Config (class in flim.core.configuration) configure() (flim.plugin.AbstractPlugin method), [1] configure_importer() (flim.gui.importdlg.ImportDlg method) ConfigureAxisDlg (class in flim.gui.dialogs) ConfigureCategoriesDlg (class in flim.gui.dialogs) ConfigureFeatureDlg (class in flim.gui.dialogs) ConfigureFiltersDlg (class in flim.gui.dialogs) copy() (flim.plugin.Task method) create_default() (flim.core.configuration.Config method) create_graph() (flim.core.analysisgraph.AnalysisNode method) create_instance() (in module flim.analysis.ml.autoencoder) (in module flim.plugin), [1] create_popupmenu() (flim.gui.datapanel.PandasFrame method) CreateColumn (class in flim.core.analysisgraph)

D

dataanalyzer (class in flim.core.analyzer) DataBucket (class in flim.plugin), [1] dataimporter (class in flim.core.importer) DataNode (class in flim.core.analysisgraph) datasets (class in flim.analysis.aetraining) DataUpdatedEvent (class in flim.gui.events) DataWindowEvent (class in flim.gui.events)

defaultparser (class in flim.core.parser) defaultpreprocessor (class in flim.core.preprocessor) DelimiterPanel (class in flim.gui.delimpanel) DictFrame (class in flim.gui.dicttablepanel) DictTable (class in flim.gui.dicttablepanel) discover_plugin_classes() (in module flim.plugin), [1] Draw() (flim.gui.datapanel.FilterColLabelRenderer method) drop_columns() (flim.core.preprocessor.defaultpreprocessor method)

E

EndLabelEdit() (flim.gui.listcontrol.AnalysisListCtrl method) (flim.gui.listcontrol.FilterListCtrl method) execute() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.boxplots.BoxPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.randomforest.RandomForest method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] (flim.plugin.DataBucket method), [1]

exit() (flim.gui.dicttablepanel.DictFrame method)

F

Filter (class in flim.core.filter) FilterColLabelRenderer (class in flim.gui.datapanel) FilterListCtrl (class in flim.gui.listcontrol) FilterTable (class in flim.gui.filtertablepanel) fire_rowsupdated_event() (flim.gui.listcontrol.AnalysisListCtrl method) (flim.gui.listcontrol.FilterListCtrl method) (flim.gui.seriesfiltertree.SeriesFilterCtrl method) fit() (flim.analysis.ml.autoencoder.AbsAutoencoder method) (flim.analysis.ml.autoencoder.Autoencoder_One_Six method) (flim.analysis.ml.autoencoder.Autoencoder_One_Three method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Five method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Ten method) fix() (flim.core.configuration.Config method) fix_filename() (in module flim.gui.dialogs) fix_label() (in module flim.core.plots) flim module flim.analysis module flim.analysis.aerun module flim.analysis.aetraining module flim.analysis.barplots module flim.analysis.boxplots module flim.analysis.freqhisto module flim.analysis.heatmap module flim.analysis.kde module flim.analysis.lineplots module flim.analysis.ml module flim.analysis.ml.autoencoder module flim.analysis.pca module flim.analysis.randomforest module flim.analysis.relativechange module flim.analysis.scatterplots module flim.analysis.summarystats module flim.core module flim.core.analysisgraph module

flim.core.analyzer module flim.core.calculator module flim.core.configuration module flim.core.filter module flim.core.importer module flim.core.parser module flim.core.plots module flim.core.preprocessor module flim.core.tools module flim.gui module flim.gui.datapanel module flim.gui.delimpanel module flim.gui.dialogs module flim.gui.dicttablepanel module flim.gui.events module flim.gui.filtertablepanel module flim.gui.importdlg module flim.gui.listcontrol module flim.gui.mpanel module flim.gui.plttoolbar module flim.gui.seriesfiltertree module flim.plugin module, [1] FLIMAnalyzer (class in flim.core.tools) forward() (flim.analysis.ml.autoencoder.Autoencoder_One_Six method) (flim.analysis.ml.autoencoder.Autoencoder_One_Three method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Five method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Ten method) fov_time_well_parser (class in flim.core.parser) fov_treatment_cell_parser (class in flim.core.parser) FreqHisto (class in flim.analysis.freqhisto) FreqHistoConfigDlg (class in flim.analysis.freqhisto)

G

get() (flim.core.configuration.Config method) get_analysis_function() (flim.core.analyzer.dataanalyzer method) get_analysis_options() (flim.core.analyzer.dataanalyzer method) get_analyzer() (flim.core.tools.FLIMAnalyzer method) get_autoencoder_classes() (in module flim.analysis.ml.autoencoder) get_available_parsers() (in module flim.core.parser) get_checked_indices() (flim.gui.listcontrol.AnalysisListCtrl method) get_checked_items() (flim.gui.listcontrol.AnalysisListCtrl method) get_config() (flim.core.analyzer.dataanalyzer method) (flim.core.importer.dataimporter method) (flim.core.parser.defaultparser method) (flim.core.preprocessor.defaultpreprocessor method) (flim.gui.dialogs.ConfigureCategoriesDlg method) (flim.gui.importdlg.ImportDlg method) get_config_name() (flim.plugin.AbstractPlugin method), [1] get_data() (flim.core.tools.FLIMAnalyzer method) get_default_parameters() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.randomforest.RandomForest method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] get_delimiter() (flim.core.importer.dataimporter method) get_delimiters() (flim.gui.delimpanel.DelimiterPanel method) get_description() (flim.analysis.aetraining.AETraining method) (flim.analysis.ml.autoencoder.AbsAutoencoder method) (flim.analysis.ml.autoencoder.Autoencoder_One_Six method) (flim.analysis.ml.autoencoder.Autoencoder_One_Three method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Five method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Ten method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.summarystats.SummaryStats method) (flim.core.filter.Filter method) (flim.plugin.AbstractPlugin method), [1] get_dropped() (flim.core.filter.Filter method) (flim.core.filter.RangeFilter method) get_dropped_str() (flim.gui.listcontrol.FilterListCtrl method) get_excluded_files() (flim.core.importer.dataimporter method) get_executor() (flim.core.tools.FLIMAnalyzer method) get_files() (flim.core.importer.dataimporter method) get_filters() (flim.core.analyzer.dataanalyzer method) get_graph() (flim.core.analysisgraph.AnalysisNode method) get_icon() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.boxplots.BoxPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.randomforest.RandomForest method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] get_importer() (flim.core.tools.FLIMAnalyzer method) get_index_by_key() (flim.gui.listcontrol.AnalysisListCtrl method) get_key_col() (flim.gui.listcontrol.AnalysisListCtrl method) get_keys() (flim.core.configuration.Config method) get_mapped_parameters() (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.boxplots.BoxPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] get_name() (flim.analysis.ml.autoencoder.AbsAutoencoder method) (flim.core.analysisgraph.BasicNode method) (flim.core.filter.Filter method) (flim.core.parser.defaultparser method) get_nodekeys() (flim.core.configuration.Config method) get_option_panels() (flim.analysis.aerun.AERunningConfigDlg method) (flim.analysis.aetraining.AETrainingConfigDlg method) (flim.analysis.barplots.BarPlotConfigDlg method) (flim.analysis.freqhisto.FreqHistoConfigDlg method) (flim.analysis.heatmap.HeatmapConfigDlg method) (flim.analysis.pca.PCAnalysisConfigDlg method) (flim.analysis.randomforest.RandomForestConfigDlg method) (flim.analysis.relativechange.RelativeChangeConfigDlg method) (flim.analysis.summarystats.SummaryStatsConfigDlg method) (flim.gui.dialogs.BasicAnalysisConfigDlg method) get_outputs() (flim.core.analysisgraph.AnalysisNode method) get_parameters() (flim.plugin.AbstractPlugin method), [1] get_params() (flim.core.filter.Filter method) (flim.core.filter.RangeFilter method) get_parent() (flim.core.configuration.Config method) get_parser() (flim.core.importer.dataimporter method) get_plugin_class() (in module flim.plugin), [1] get_preprocessor() (flim.core.importer.dataimporter method) (flim.core.tools.FLIMAnalyzer method) get_range() (flim.core.filter.RangeFilter method) get_rangefilters() (flim.core.analyzer.dataanalyzer method)

get_rangehigh() (flim.core.filter.RangeFilter method) get_rangelow() (flim.core.filter.RangeFilter method) get_regexpatterns() (flim.core.parser.defaultparser method) get_replacementheaders() (flim.core.preprocessor.defaultpreprocessor method) get_required_categories() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.boxplots.BoxPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.randomforest.RandomForest method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] get_required_features() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.boxplots.BoxPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.randomforest.RandomForest method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] get_reserved_categorycols() (flim.core.importer.dataimporter method) get_selectable_features() (flim.gui.dialogs.BasicAnalysisConfigDlg method) get_selected() (flim.gui.dialogs.BasicAnalysisConfigDlg method) (flim.gui.dialogs.SelectGroupsDlg method) get_settings() (flim.gui.dialogs.ConfigureAxisDlg method) (flim.gui.dialogs.ConfigureFeatureDlg method) get_total_dropped_rows() (flim.gui.listcontrol.FilterListCtrl method) get_view_dropped() (flim.gui.listcontrol.FilterListCtrl method) GetAction() (flim.gui.events.DataWindowEvent method) (flim.gui.events.PlotEvent method) GetAttr() (flim.gui.datapanel.PandasTable method) (flim.gui.filtertablepanel.FilterTable method) GetCheckedItems() (flim.gui.seriesfiltertree.SeriesFilterCtrl method) GetColLabelValue() (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) GetConfig() (flim.gui.events.DataWindowEvent method) GetData() (flim.gui.datapanel.PandasFrame method) (flim.gui.datapanel.PandasTable method) (flim.gui.dialogs.ConfigureFiltersDlg method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.events.DataWindowEvent method) (flim.gui.filtertablepanel.FilterTable method) (flim.gui.listcontrol.AnalysisListCtrl method) (flim.gui.seriesfiltertree.SeriesFilterCtrl method) GetDataId() (flim.gui.events.DataWindowEvent method) (flim.gui.events.PlotEvent method) GetDict() (flim.gui.dicttablepanel.DictTable method) (flim.gui.filtertablepanel.FilterTable method) GetDroppedRows() (flim.gui.filtertablepanel.FilterTable method) (flim.gui.listcontrol.FilterListCtrl method) GetFigure() (flim.gui.events.PlotEvent method) GetFloatColIdx() (flim.gui.datapanel.PandasTable method) GetFloatCols() (flim.gui.datapanel.PandasTable method) GetGroups() (flim.gui.events.DataWindowEvent method) GetLongColIdx() (flim.gui.datapanel.PandasTable method) GetNumberCols() (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) GetNumberRows() (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) GetTitle() (flim.gui.events.DataWindowEvent method) (flim.gui.events.PlotEvent method) GetTypeName() (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) GetUpdatedData() (flim.gui.events.DataUpdatedEvent method) GetUpdatedItems() (flim.gui.listcontrol.ListCtrlUpdatedEvent method) GetValue() (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) GetValueAsBool() (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) GetViewData() (flim.gui.datapanel.PandasFrame method) grouped_boxplot() (in module flim.core.plots) grouped_kdeplot() (flim.analysis.kde.KDE method) (in module flim.core.plots) grouped_lineplot() (flim.analysis.lineplots.LinePlot method) grouped_meanbarplot() (in module flim.analysis.barplots) (in module flim.core.plots) grouped_meanbarplot_new() (in module flim.core.plots) grouped_scatterplot() (flim.analysis.scatterplots.ScatterPlot method) (in module flim.core.plots)

H

Heatmap (class in flim.analysis.heatmap) HeatmapConfigDlg (class in flim.analysis.heatmap)

histogram() (flim.analysis.freqhisto.FreqHisto method) (in module flim.core.plots)

I

import_data() (flim.core.importer.dataimporter method) ImportDlg (class in flim.gui.importdlg) init_autoencoders() (in module flim.analysis.ml.autoencoder) init_patterns() (flim.core.parser.celltype_compartment_fov_treatment_cell_parser method) (flim.core.parser.compartment_fov_treatment_cell_parser method) (flim.core.parser.compartment_treatment_fov_cell_parser method) (flim.core.parser.defaultparser method) (flim.core.parser.fov_time_well_parser method) (flim.core.parser.fov_treatment_cell_parser method) (flim.core.parser.treatment_fov_cell_parser method) (flim.core.parser.treatment_fov_time_parser method) (flim.core.parser.treatment_time_parser method) init_plugins() (in module flim.plugin), [1] init_plugins_configs() (in module flim.plugin), [1]

input_definition() (flim.plugin.AbstractPlugin method), [1] inputs() (flim.plugin.Task method) instantiate_parser() (in module flim.core.parser) is_analyzable() (flim.gui.datapanel.PandasFrame method) is_equal() (flim.plugin.Task method) is_identical_range() (flim.core.filter.RangeFilter method) is_modified() (flim.core.configuration.Config method) (flim.gui.datapanel.PandasFrame method) is_not_equal() (flim.plugin.Task method) is_not_None() (flim.core.configuration.Config method) is_readonly() (flim.core.parser.defaultparser method) is_selected() (flim.core.filter.Filter method) is_valid() (flim.core.configuration.Config method) IsAnalyzable() (flim.gui.events.DataWindowEvent method) IsEnableClose() (flim.gui.events.DataWindowEvent method)

K

KDE (class in flim.analysis.kde)

L

LinePlot (class in flim.analysis.lineplots)

ListCtrlUpdatedEvent (class in flim.gui.listcontrol) ListTable (class in flim.gui.dicttablepanel)

M

map() (flim.plugin.Task method) MatplotlibFrame (class in flim.gui.mpanel) MatplotlibPanel (class in flim.gui.mpanel) Merge (class in flim.core.analysisgraph) module flim flim.analysis flim.analysis.aerun flim.analysis.aetraining flim.analysis.barplots flim.analysis.boxplots flim.analysis.freqhisto flim.analysis.heatmap flim.analysis.kde flim.analysis.lineplots flim.analysis.ml flim.analysis.ml.autoencoder flim.analysis.pca flim.analysis.randomforest flim.analysis.relativechange flim.analysis.scatterplots flim.analysis.summarystats flim.core flim.core.analysisgraph flim.core.analyzer flim.core.calculator flim.core.configuration flim.core.filter flim.core.importer flim.core.parser flim.core.plots flim.core.preprocessor flim.core.tools flim.gui flim.gui.datapanel flim.gui.delimpanel flim.gui.dialogs flim.gui.dicttablepanel flim.gui.events flim.gui.filtertablepanel flim.gui.importdlg flim.gui.listcontrol flim.gui.mpanel flim.gui.plttoolbar flim.gui.seriesfiltertree flim.plugin, [1]

MyCustomToolbar (class in flim.gui.plttoolbar)

N

nadh_perc() (in module flim.core.preprocessor) nadph_perc() (in module flim.core.preprocessor) next_nodeid() (in module flim.core.analysisgraph)

no_parser (class in flim.core.parser) noninteractive_test() (in module flim.core.tools) normalize() (in module flim.core.plots) not_() (flim.plugin.Task method)

O

OnAddFiles() (flim.gui.importdlg.ImportDlg method) OnAutosize() (flim.gui.datapanel.PandasFrame method) OnBrowse() (flim.analysis.aerun.AERunningConfigDlg method) OnCancel() (flim.gui.importdlg.ImportDlg method) OnCheckItem() (flim.gui.listcontrol.AnalysisListCtrl method) (flim.gui.listcontrol.FilterListCtrl method) OnClickFeature() (flim.gui.dialogs.BasicAnalysisConfigDlg method) OnDataUpdated() (flim.gui.datapanel.PandasFrame method) OnDataWindowRenamed() (flim.gui.datapanel.PandasFrame method) OnDeselectAll() (flim.analysis.aetraining.AETrainingConfigDlg method) (flim.gui.dialogs.BasicAnalysisConfigDlg method) (flim.gui.dialogs.SelectGroupsDlg method) OnDeselectAllAggs() (flim.analysis.summarystats.SummaryStatsConfigDlg method) OnErroBarChange() (flim.analysis.barplots.BarPlotConfigDlg method) OnFilterData() (flim.gui.datapanel.PandasFrame method) OnFilterSettings() (flim.gui.datapanel.PandasFrame method) OnFiltersUpdated() (flim.gui.dialogs.ConfigureFiltersDlg method) OnFilterUpdated() (flim.gui.listcontrol.FilterListCtrl method) OnImportFiles() (flim.gui.importdlg.ImportDlg method) OnInit() (flim.gui.datapanel.TestApp method) OnLabelClick() (flim.gui.datapanel.PandasFrame method) OnLabelDClick() (flim.gui.datapanel.PandasFrame method) OnLoad() (flim.gui.dialogs.ConfigureFiltersDlg method) OnOK() (flim.gui.dialogs.BasicAnalysisConfigDlg method) (flim.gui.dialogs.ConfigureFeatureDlg method) (flim.gui.dialogs.ConfigureFiltersDlg method) (flim.gui.dialogs.RenameGroupsDlg method) (flim.gui.dialogs.SelectGroupsDlg method) OnOpenFile() (flim.gui.importdlg.ImportDlg method) OnParserChanged() (flim.gui.importdlg.ImportDlg method) OnPivotAll() (flim.gui.datapanel.PandasFrame method) OnPivotView() (flim.gui.datapanel.PandasFrame method) OnPopupItemSelected() (flim.gui.datapanel.PandasFrame method) OnPrecisionChange() (flim.gui.datapanel.PandasFrame method)

OnPreview() (flim.gui.importdlg.ImportDlg method) OnQuit() (flim.gui.dialogs.BasicAnalysisConfigDlg method) (flim.gui.dialogs.ConfigureAxisDlg method) (flim.gui.dialogs.ConfigureCategoriesDlg method) (flim.gui.dialogs.ConfigureFeatureDlg method) (flim.gui.dialogs.ConfigureFiltersDlg method) (flim.gui.dialogs.RenameGroupsDlg method) (flim.gui.dialogs.SelectGroupsDlg method) OnRefGroupChanged() (flim.analysis.relativechange.RelativeChangeConfigDlg method) OnRemoveFiles() (flim.gui.importdlg.ImportDlg method) OnReset() (flim.gui.importdlg.ImportDlg method) OnRGridSize() (flim.gui.importdlg.ImportDlg method) OnSave() (flim.gui.datapanel.PandasFrame method) (flim.gui.dialogs.ConfigureCategoriesDlg method) OnSaveView() (flim.gui.datapanel.PandasFrame method) OnSelectAll() (flim.analysis.aetraining.AETrainingConfigDlg method) (flim.gui.dialogs.BasicAnalysisConfigDlg method) (flim.gui.dialogs.SelectGroupsDlg method) OnSelectAllAggs() (flim.analysis.summarystats.SummaryStatsConfigDlg method) OnSplit() (flim.gui.datapanel.PandasFrame method) OnUseFilters() (flim.gui.dialogs.ConfigureFiltersDlg method) OnViewAll() (flim.gui.datapanel.PandasFrame method) or_() (flim.plugin.Task method) output_definition() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] (flim.plugin.DataBucket method), [1] outputs() (flim.plugin.Task method)

P

PandasFrame (class in flim.gui.datapanel) PandasGrid (class in flim.gui.datapanel) PandasTable (class in flim.gui.datapanel) parse_arguments() (in module flim.core.tools) parsefilename() (flim.core.parser.defaultparser method) (flim.core.parser.no_parser method) PCAnalysis (class in flim.analysis.pca)

PCAnalysisConfigDlg (class in flim.analysis.pca) percentile() (in module flim.analysis.summarystats) (in module flim.core.preprocessor) pipe() (flim.plugin.Task method) pivot_() (flim.gui.datapanel.PandasFrame method) PlotEvent (class in flim.gui.events) plugin() (in module flim.plugin), [1]

R

RandomForest (class in flim.analysis.randomforest) RandomForestConfigDlg (class in flim.analysis.randomforest) RangeFilter (class in flim.core.filter) ratio() (in module flim.core.preprocessor) read_from_json() (flim.core.configuration.Config method) RelativeChange (class in flim.analysis.relativechange) RelativeChangeConfigDlg (class in flim.analysis.relativechange) remove() (flim.core.configuration.Config method) remove_allfiles() (flim.core.importer.dataimporter method) remove_files() (flim.core.importer.dataimporter method) rename_headers() (flim.core.preprocessor.defaultpreprocessor method) RenameGroupsDlg (class in flim.gui.dialogs) reorder_columns() (flim.core.preprocessor.defaultpreprocessor method) run() (flim.plugin.AbstractPlugin method), [1] (flim.plugin.DataBucket method), [1] (flim.plugin.Task method)

run_configuration_dialog() (flim.analysis.aerun.RunAE method) (flim.analysis.aetraining.AETraining method) (flim.analysis.barplots.BarPlot method) (flim.analysis.boxplots.BoxPlot method) (flim.analysis.freqhisto.FreqHisto method) (flim.analysis.heatmap.Heatmap method) (flim.analysis.kde.KDE method) (flim.analysis.lineplots.LinePlot method) (flim.analysis.pca.PCAnalysis method) (flim.analysis.randomforest.RandomForest method) (flim.analysis.relativechange.RelativeChange method) (flim.analysis.scatterplots.ScatterPlot method) (flim.analysis.summarystats.SummaryStats method) (flim.plugin.AbstractPlugin method), [1] run_model() (flim.analysis.aerun.RunAE method) RunAE (class in flim.analysis.aerun)

S

save_dataframe() (in module flim.gui.dialogs) save_figure() (in module flim.gui.dialogs) SaveConnString() (flim.gui.dialogs.ConfigureAxisDlg method) SaveModified() (flim.gui.events.DataWindowEvent method) ScatterPlot (class in flim.analysis.scatterplots) select() (flim.core.filter.Filter method) SelectGroupsDlg (class in flim.gui.dialogs) serialize() (flim.plugin.Task method) SeriesFilter (class in flim.core.filter) SeriesFilterChanged() (flim.gui.seriesfiltertree.SeriesFilterCtrl method) SeriesFilterCtrl (class in flim.gui.seriesfiltertree) set_allowed() (flim.core.filter.RangeFilter method) set_analyzer() (flim.core.tools.FLIMAnalyzer method) set_column_combos() (flim.core.importer.dataimporter method) set_delimiter() (flim.core.importer.dataimporter method) set_delimiters() (flim.gui.delimpanel.DelimiterPanel method) set_dependencies() (flim.plugin.Task method) set_downstream() (flim.plugin.Task method) set_dropcolumns() (flim.core.preprocessor.defaultpreprocessor method) set_excluded_files() (flim.core.importer.dataimporter method) set_files() (flim.core.importer.dataimporter method) set_header_renderer() (flim.gui.datapanel.PandasFrame method) set_importer() (flim.core.tools.FLIMAnalyzer method) set_input() (flim.plugin.AbstractPlugin method), [1] set_inputs() (flim.core.analysisgraph.AnalysisNode method) set_modified() (flim.gui.datapanel.PandasFrame method) set_name() (flim.core.filter.Filter method) set_outputgenerator() (flim.core.tools.FLIMAnalyzer method) set_parameter_item() (flim.core.filter.Filter method) set_params() (flim.core.filter.Filter method) (flim.core.filter.RangeFilter method) set_parser() (flim.core.importer.dataimporter method) set_preprocessor() (flim.core.importer.dataimporter method) (flim.core.tools.FLIMAnalyzer method)

set_range() (flim.core.filter.RangeFilter method) set_rangefilters() (flim.core.analyzer.dataanalyzer method) set_rangehigh() (flim.core.filter.RangeFilter method) set_rangelow() (flim.core.filter.RangeFilter method) set_regexpatterns() (flim.core.parser.defaultparser method) (flim.core.parser.no_parser method) set_replacementheaders() (flim.core.preprocessor.defaultpreprocessor method) set_seriesfilter() (flim.core.analyzer.dataanalyzer method) set_upstream() (flim.plugin.Task method) SetData() (flim.gui.datapanel.PandasFrame method) (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.listcontrol.AnalysisListCtrl method) (flim.gui.listcontrol.FilterListCtrl method) setdata() (flim.gui.seriesfiltertree.SeriesFilterCtrl method) setdrop() (flim.gui.listcontrol.FilterListCtrl method) SetDroppedRows() (flim.gui.filtertablepanel.FilterTable method) (flim.gui.listcontrol.FilterListCtrl method) SetEditable() (flim.gui.listcontrol.AnalysisListCtrl method) SetEventInfo() (flim.gui.events.DataWindowEvent method) (flim.gui.events.PlotEvent method) SetRow() (flim.gui.listcontrol.AnalysisListCtrl method) SetUpdatedData() (flim.gui.events.DataUpdatedEvent method) SetUpdatedItems() (flim.gui.listcontrol.ListCtrlUpdatedEvent method) SetValue() (flim.gui.datapanel.PandasTable method) (flim.gui.dicttablepanel.DictTable method) (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) SetValueAsBool() (flim.gui.dicttablepanel.ListTable method) (flim.gui.filtertablepanel.FilterTable method) ShowColIndex() (flim.gui.events.DataWindowEvent method) stacked_histogram() (in module flim.core.plots) SummaryStats (class in flim.analysis.summarystats) SummaryStatsConfigDlg (class in flim.analysis.summarystats)

T

Task (class in flim.plugin) task() (in module flim.plugin) TestApp (class in flim.gui.datapanel) tm() (in module flim.core.preprocessor) train() (flim.analysis.aetraining.AETraining method) training (flim.analysis.ml.autoencoder.AbsAutoencoder attribute) (flim.analysis.ml.autoencoder.Autoencoder_One_Six attribute) (flim.analysis.ml.autoencoder.Autoencoder_One_Three attribute) (flim.analysis.ml.autoencoder.Autoencoder_Two_Five attribute) (flim.analysis.ml.autoencoder.Autoencoder_Two_Ten attribute) transform() (flim.analysis.ml.autoencoder.AbsAutoencoder method) (flim.analysis.ml.autoencoder.Autoencoder_One_Six method) (flim.analysis.ml.autoencoder.Autoencoder_One_Three method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Five method) (flim.analysis.ml.autoencoder.Autoencoder_Two_Ten method)

treatment_fov_cell_parser (class in flim.core.parser) treatment_fov_time_parser (class in flim.core.parser) treatment_time_parser (class in flim.core.parser) trp_Eperc_1() (in module flim.core.preprocessor) trp_Eperc_2() (in module flim.core.preprocessor) trp_Eperc_3() (in module flim.core.preprocessor) trp_r() (in module flim.core.preprocessor)

U

update() (flim.core.configuration.Config method) update_listlabel() (flim.gui.importdlg.ImportDlg method) update_precision() (flim.gui.datapanel.PandasFrame method)

update_view() (flim.gui.datapanel.PandasFrame method) UpdateDroppedRows() (flim.gui.listcontrol.FilterListCtrl method) updateusefilter() (flim.gui.datapanel.PandasFrame method)

V

validate() (flim.core.configuration.Config method) (flim.plugin.AbstractPlugin method), [1]

W

write_to_json() (flim.core.configuration.Config method)